Defended theses

SPHERE welcomes many PhD students.

Our Theses

Randomization of nursing homes and risk of attrition: choice of design and analysis strategy

Directeur(s) : Bruno GIRAUDEAU Bertrand FOUGERE

In a cluster randomized trial, randomization units are groups of individuals, rather than individuals themselves. Nursing homes are facilities for older adults in need of care. Regarding the type of intervention assessed in such settings, cluster randomized trial is as a well-adapted design. With the global ageing of the population, trials in nursing homes are required but still underrepresented and the reasons are, among others, methodological issues such as the high risk of attrition, essentially due to death. The objective of this PhD thesis was to provide a validated approach to estimate an intervention effect when a cluster randomized trial is planned in nursing homes and faces the risk of a high rate of discontinuation due to death. In the first part of this work we investigated, through a methodological review, the strategies used to deal with that attrition. The review was based on reports of cluster randomized trials planned in nursing homes and published between 2005 and 2020 in selected general medicine and geriatric journals with high impact factors. In the second part of this work, we focused on the closed-cohort recruitment strategy, the most frequently used design but also the most exposed to the risk of attrition. The aim of the second part was to assess how an open-cohort design could have been considered as a relevant alternative to a closed-cohort design. The last part of this work was to assess through a Monte Carlo simulation study how bias can be reduced when estimating an intervention effect using an open-cohort design as compared to a closed cohort, in the context of cluster randomized trial in nursing home with not at random missing data.
Most of the interventions assessed in nursing homes are at cluster level, making the open-cohort a well-adapted design. Individual attrition is no longer an issue and it provides low biased estimates of the intervention effect. Open-cohort must be considered more often when cluster randomized trials are planned in nursing homes.

PhD defense date: 11/03/2024

Personal recovery in bipolar disorder: concept definition and measurement tools. Therapeutic patient education as a lever for recovery.

Directeur(s) : Marie GRALL-BRONNEC
The aim of the first part of this study was to obtain a satisfactory psychometric tool for assessing the personal recovery (PR) of bipolar people in France. A systematic review and an exploratory qualitative study with bipolar sufferers enabled us to identify specific salient themes: the importance of self-management, and of the quality of connectedness with others and the necessity of changes in the metacognitive relationships maintained with the disorders. We then translated and adapted Jones et al.'s BRQ recovery scale in the light of these results, to obtain a 31-item, 7-dimension scale that we were able to validate psychometrically, the BRQ-Fr. The second part of the study focused on the effects of a therapeutic education program on PR, using a mixed qualitative and quantitative approach. The discourse of caregivers on the one hand, and participating patients on the other, were analyzed. They all described a relational security and new carer-client relationships, a promotion of empowerment and a destigmatization, as well as positive identity changes. A prospective pre-post study with a 3-month follow-up showed positive changes in the feeling of PR as measured by the QRB-Fr, and in the stage of PR as measured by the STORI scale, as well as in self-assessments of depression, self-esteem and self-efficacy.
PhD defense date: 23/10/2023

Analysis of cluster randomized trials with a time-to-event outcome

Directeur(s) : Agnès CAILLE
Superviseur(s) : Solène DESMEE

Cluster randomised trials (CRTs) are trials in which groups of individuals, called clusters, are randomised, rather than individuals themselves. In such study design, the responses of the individuals within the same cluster are correlated and statistical analysis must take into account this clustering. Time-to-event outcomes are not
uncommon in CRTs, but there is no recommendation on the optimal analysis.
In randomised clinical trials with a time-to-event outcome, the intervention effect could be quantified by a difference in restricted mean survival time (RMST) between the intervention and control groups up to time 𝑡∗. This measure is an alternative to the hazard ratio that does not rely on the proportional hazards assumption. It is
easily interpretable as the expected survival gain until 𝑡∗ due to the intervention. The main objective of this work was to study the difference in RMST to analyse CRTs with time-to-event outcomes.
In the first part of this work, we proposed and compared through a simulation study, two approaches to estimate a difference in RSMT in CRTs (the integration of the Kaplan-Meier curves and the pseudo-values regression). The methods showed good performance when there was a sufficient number of clusters (≥50). For CRTs with a limited number of clusters, a permutation test for pseudo-values regression was implemented and controlled the type I error, which was over 5% otherwise. In the second part of the work, we proposed the use of small samples bias-corrections of the sandwich variance estimator, as an alternative to the permutation test. These methods, especially the Fay and Graubard correction associated with a Student distribution, showed type I errors close to
5%.
This work opens the way for better analysing time-to-event outcomes and for quantifying the intervention effect by a difference in RMST in CRTs.

PhD defense date: 18/10/2023

Discover older theses

Characterization of social cognition abilities in behavioral addictions through the prism of gaming and gambling disorders

Superviseur(s):

This thesis focused on social cognition (SC) in the two behavioral addictions (BA) included in international classifications: gaming (GmD) and gambling (GbD) disorders. Two systematic reviews exposed the scarcity of studies linking SC and BA. Nevertheless, studies included in the reviews suggested the presence of an alteration of some of the SC’s components. Additionally, patient-reported outcomes confirmed the presence of interpersonal difficulties. These elements demonstrated the necessity to explore the SC abilities of patients with Gmd or GbD, in order to improve knowledge on addictive processes and propose alternative treatments focused on these difficulties. This thesis presented three studies on gamblers or gamers, whether or not they have an addiction. The first study showed specific allocation of attention toward social information in poker players compared to controls. The second study demonstrated a link between difficulties in identifying facial emotion and GbD and specificities in social metacognition in GmD. Finally, preliminary results of a study regarding GbD patients at the beginning of their treatment showed the importance of taking into account patient-reported outcomes in SC. Those results were discussed in light of clinical et scientific aspects, and put in perspective with future possible research.​



PhD defense date: 06/10/2022

Causal inference from observational data: development and applications for critical care

Directeur(s) : Yohann FOUCHER
Superviseur(s):

The increasing amount of observational data, especially in critical care, leads to the consideration of causal inference statistical methods. This thesis presents two works that highlight the current challenges of these statistical methods used on observational health data. The first analysis evaluates the impact of barbiturates in a population of trauma brain injured patients prospectively included in the open critical care cohort AtlanRéa. The evaluation of the impact of barbiturates was possible by respecting the assumptions of causal inference and by using a method based on propensity scores: inverse probability weighting.

Beyond the results of this analysis, which showed an increase in mortality in the group treated with barbiturates, we were faced with the problem of the violation of the positivity assumption. We then compared different statistical methods of causal inference in a context of violation of the positivity assumption, which can be associated with an extrapolation issue. The methods predicting the occurrence of the outcome are the most robust in these situations. In this context of accumulation of health data, a perspective of optimization of the use of statistical methods in the framework of causal inference will reside in the use of machine learning algorithms to avoid the problems of model specification.



PhD defense date: 13/05/2022

Multilevel joint modelling of target lesions dynamics and survival : application to the prediction of the response to immunotherapy in bladder cancer

Directeur(s) : Solène DESMEE Jérémie GUEDJ
Superviseur(s):

Treatment evaluation in oncology relies on time-to-death and longitudinal measurements of the Sum of Longest Diameters (SLD) of target lesions. Both processes and their association can be analyzed together using a nonlinear joint model. However, using a composite marker such as SLD neglects the heterogeneity in lesion dynamics, which might be exacerbated under immunotherapy.

The main objective of this PhD was to develop multilevel nonlinear joint models of tumor dynamics and their impact on survival, to better characterize all the source of variability in the response to treatment. We relied on data from a phase 2 (IMvigor210) and a phase 3 (IMvigor211) clinical trials of 300 and 900 advanced or metastatic Urothelial Carcinoma (UC) patients, treated with atezolizumab immune checkpoint inhibitor. In a first nonlinear joint model, we showed the impact of tumor location on its dynamics and association with survival. In particular, the liver lesions dynamics was strongly associated with the risk of death as compared to other location. Then, we showed the ability of HMC Bayesian algorithm implemented in Stan software to provide unbiased and precise estimation of the parameters of a nonlinear joint model of SLD and survival, with reasonable sensitivity to prior information. Finally, we developed a Bayesian hierarchical joint model of individual lesions and survival. An additional level of random effect was integrated, specific to the lesion, to quantify the inter-lesions variability under immunotherapy. Using individual dynamic prediction approaches, we showed the benefit of the individual lesions follow-up to identify most at risk patient as compared to SLD follow-up.

This work paves the way for a better understanding of the inter and intra-patient variability in response to new immunotherapy treatments.



PhD defense date: 21/03/2022

Management of complex patients in Pediatric Odontology: Benefit / Risk of practices and improvement pathways, focus on EMONO

Tony PRUD'HOMME
Directeur(s) : Caroline VICTORRI-VIGNEAU
Superviseur(s): Serena LOPEZ-CAZAUX

The widespread use of MEOPA in dental practices is relatively recent. A review of practices and the legal framework related to the use of nitrous oxide in pediatric odontology seems so particularly relevant. In addition, the emergence of derived uses, outside the context of care or during, leads to increased vigilance towards it. It therefore seems appropriate to identify the effects felt and sought by children during inhalation of MEOPA in the context of dental care. During this thesis, we recalled the context of French use of nitrous oxide and then analyzed it against the benefit / risk of the various other sedations used in pediatric odontology. We then developed a presentation of the different works carried out, their materials and methods and their results. The whole was then discussed and future prospects considered



PhD defense date: 15/03/2021

Expression the cluster effect for binary outcomes

Ariane Murielle MBEKWE YEPNANG
Directeur(s) : Bruno GIRAUDEAU Sandra ELDRIDGE
Superviseur(s): Agnès CAILLE

In cluster randomized trials, it is recommended to report a measure of intracluster correlation, such as the intraclass correlation coefficient (ICC), for each primary outcome.

Providing intracluster correlation estimates, which we can also call clustering estimates, may help in sample size calculation of future cluster randomized trials but also in interpreting the results of a trial. For instance, a lower intracluster correlation in the intervention arm as compared to the control one may reveal a better standardization in practices among clusters of the intervention arm, leading to a lower between-cluster heterogeneity in outcomes. Yet, when the outcome is binary, the ICC is known to be associated with the prevalence of the outcome. This may raise issues when using ICC estimates to plan a new study, because expected outcome prevalences may di er from those observed in the study from which the ICC estimates were derived. This association also challenges the interpretation of the ICC because ICC values no longer just depend on clustering level. The aim of this PhD thesis was to study several intracluster correlation measures to identify whether they depend on the outcome prevalence as the ICC does or not. We first focused on the R coefficient, a coefficient initially proposed by Rosner for ophthalmologic data and later extended by Crespi et al. who asserted that the R coefficient may be less influenced by the outcome prevalence than is the ICC. We showed by a simulation study that this assertion is false and that the R coefficient is probably even worse than the ICC as an intracluster correlation measure. We further studied other measures such as the variance partition coefficient, the median odds ratio or the tetrachoric correlation coefficient. We also proposed to consider the relative deviation of an ICC estimate to its theoretical maximum possible value. All these measures were studied in an extensive simulation study, whose conclusion was that all of them depend in some way on the outcome prevalence. Although some measures may be preferred in some situations, none outperforms the others in every situation, and none can be considered independent from the outcome prevalence. Assessing intracluster correlation independently from the outcome prevalence remains an open  eld of research.



PhD defense date: 10/12/2020

Which place for shared decision making in the context of kidney transplantation? A mixed-methods research exploring patient experience.

Directeur(s) : Leila MORET
Superviseur(s): Jean-Marie JANUEL

Although kidney transplantation provides a significant benefit over dialysis, question regarding the eligibility for transplantation, the impact of replacement treatment on their lives, make the mode of renal replacement therapy a difficult decision. Therefore, Health Authority suggests shared decision-making to help patients make timely treatment modality decision. Little is known about how patient perceive their participation in the shared decision-making process. This research aims to explore the experience of patients and the factors that influence them indecision-making situations, as well as to evaluate the impact of this experience on their future. This research is based on a mixed methods research (QUANTI > quali).

It combines an interpretive phenomenological analysis and an observational study design to measure decisional conflict perceived by patients on the waiting list and to explore the factors that influence decision regret, quality of life and adherence among transplant recipients. This study reports that the experience of waiting list was identified as a necessary step in their pathway. They experienced as an implicit decision that shapes patients' attitudes towards other decisions and influences their ability to cope with the uncertainty of living with chronic kidney disease. The challenge of considering all stages of shared medical decision-making is major in the context of kidney transplantation to support patient participation decision.



PhD defense date: 30/11/2020